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Dr. Alan Beggs laboratory

Beggs Laboratory
Program in Genomics/Division of Genetics
Children's Hospital Boston
300 Longwood Ave
Enders Building, 5th Floor
Boston, MA 02115
Ph: 617.919.2169
Fax: 617.730.0253

The Beggs Lab website
About Dr. Beggs

Dr. Alan Beggs (front, 3rd from left)



Understanding nemaline myopathy:
an update from the Beggs Laboratory
What is nemaline myopathy?


The diagnosis of nemaline myopathy (NM) includes patients who have muscular weakness and other special medical needs. The most common medical problems include weakness of the respiratory muscles and those in the face, arms, legs and the trunk as well as low muscle tone. Those interested in obtaining clinical information about nemaline myopathy, should contact Dr. Susan Iannaccone, a paediatric neurologist who has been involved in the care of many patients with nemaline myopathy.

Genetics. Currently, we know of at least five different genes that are associated with NM. These genes are known by their abbreviations: ACTA1, NEB, TPM2, TPM3, and TNNT1. Each one of these genes carries instructions to make a protein that is important for muscle function. The proteins these genes make are called: actin, nebulin, tropomyosin 2, tropomyosin 3, and troponin T, respectively. A person with NM may have an alteration in any one of these five genes, resulting in a protein that does not work properly. Since there are patients who have nemaline myopathy but no detectable gene alteration, we suspect that there may be other genes that are involved in the cause of this condition. This is why our group is also looking for alterations in other genes as well. Since NM is a condition that arises from gene alterations, it may be passed on from parents to children. There are some families, however, in which NM arises for the first time, with no previous family history of the disorder. We say that in these families NM occurred sporadically. Some families have contacted us to express interest in learning the recurrence chance of NM and how it is passed on in their family. Often, the only way to know this information is through genetic studies.

Genetic testing for NM. It is important to know that currently, there is no routine clinical genetic testing available for nemaline myopathy. However, patients in the Americas and the Caribbean can participate in the research studies done at our laboratory, located at Boston Children's Hospital. For patients located in other parts of the world, laboratories in Helsinki and Western Australia are doing similar studies as all three groups collaborate through the International Consortium on nemaline myopathy, sponsored by the European Neuromuscular Center. In our laboratory in Boston, we focus on understanding the various genes and proteins involved in NM as well as in other neuromuscular diseases.
Research at the Beggs Lab. To achieve our goal, we aim to enrol volunteer patients with nemaline myopathy and their families. For our studies, a sample of blood from the patient as well as all consenting first-degree relatives (mother, father, siblings, and any children) is required. We will extract DNA from the blood sample and screen candidate genes that may be involved in the cause of nemaline myopathy.
In addition to the DNA studies, we need a muscle sample that is often left over after a patient's diagnostic test. Muscle samples are extremely important for confirming the results of DNA testing as well as for studies that would allow us to determine which genes are active in the muscle of patients with nemaline myopathy and which are not. These experiments, known as microarray-based gene expression studies, are a new technology that provides information about thousands of genes at once. With the information derived from these microarray studies, we may be able to discover new treatments for NM as well as develop better tests. Therefore, if you are the parent of a child with NM, or if you yourself are affected, you may be able to help us reach these goals by participating in our research, if you wish. There is no cost for participating in this study. Any incidental charges, such as shipping or cost of the blood drawing, if not automatically covered by the family's health insurance, may be billed to our lab. Travel to Boston is not required and individuals from any part of the world can participate. For more information, please contact Elizabeth Taylor, genetic counselor at Dr. Alan Beggs' laboratory.
Recent research findings. According to Dr. Beggs, approximately 15 out of 100 (15%) patients with nemaline myopathy have alterations in the gene coding for the protein called actin. It is also thought that potentially up to half the patients with nemaline myopathy have alterations in the gene coding for nebulin, a large protein found in the muscle. Development of better tests for these nebulin changes is a primary goal in the research as there are currently no effective methods for this due to the large size of the nebulin gene. Alterations of the tropomyosin 2, 3 or troponin genes are much more rare, probably accounting for less than 5-10 out of 100 (5-10%) of cases in total.
Reporting patient results. Because our laboratory is a research laboratory, we cannot release individual results directly to patients. This is because in the United States, the Clinical Laboratory Improvement Act/Amendment (CLIA) only provides authorization to clinical laboratories to do so. However, if we do obtain information that might be significant to the family, we can have these results confirmed and reported by a CLIA-certified clinical laboratory if the family desires it. Although participation in research is free of cost, there is usually a charge associated with confirming results through the clinical lab. The clinical laboratory fees, nevertheless, are usually covered by most health insurance policies. It is also important to know that our work consists of research studies of indefinite duration. Therefore, due to the unpredictable nature of these studies, it is unlikely that we would make any clinically-relevant findings in the near future. However, participants and/or their physicians are welcome to contact us anytime for an update on the research. Regardless, the participation of patients and their families is a tremendous and generous contribution toward our understanding of nemaline myopathy, which is certain to help towards the development of more effective diagnostic tests and treatments to benefit patients and their families in the future.

Elizabeth Taylor DeChene, M.S., C.G.C.
Research Genetic Counselor
Children's Hospital Division of Genetics, Enders 5
300 Longwood Avenue
Boston
MA 02115, USA
Phone: (617) 355-2185
Fax: (617) 355-7588


Genetic Research on Nemaline Myopathy:

Information for Patients and Families Boston Children's Hospital We are a group of scientists and doctors studying the genes that may be involved in  the cause of muscular disorders.  One of our goals is to determine which genes and proteins are involved in nemaline myopathy, a rare muscular disorder.   With the generous help of enough candidate families, we may be able to learn information that will hopefully help us understand this disorder, improve diagnosis and develop new treatments. We currently know of five different genes associated with nemaline myopathy. Each of these genes carries instructions to make a protein that is important for muscle function.  These proteins are called actin, nebulin, tropomyosin 2, tropomyosin 3, and troponin T. An alteration in any of these genes can result in a non-working protein, causing nemaline myopathy. Some patients do not have an alteration in any of the genes we know about. For this reason, we suspect that there may be additional genes involved in nemaline myopathy yet to be discovered. If you are the parent of a child with nemaline myopathy, or if you yourself are affected, you may be able to make a meaningful difference by helping us find new genes and proteins associated with nemaline myopathy.
Participation consists of:
1) Informed Consent If you are interested in learning more about us, we will send you a consent form that explains the research study in more detail. Each family member who decides to participate will need to sign a different consent form. If the participant is a minor, a parent/guardian will be the one who provides consent.
2) Medical information and family history Once you have decided to participate in our study, we will ask your permission to obtain relevant medical records, such as a muscle biopsy report, from your physician. We may also ask you some questions about your family medical history.  This can be done through a brief telephone interview.
3) Blood sample We ask for a small blood sample from all available and consenting family members.  This blood sample will be used to isolate the genetic material (DNA).  The DNA will be screened for alterations in genes that may be involved in nemaline myopathy. We can arrange the blood draw either through a participant's physician or a nearby medical facility. All costs for the blood draw are paid by our laboratory.
 4) Muscle tissue from an existing biopsy Studying muscle from a person who has nemaline myopathy can tell us a lot about the genes and proteins involved in the disease. We can help find out if any frozen tissue is still available from an existing muscle biopsy and, with your permission, arrange to have it shipped to our laboratory. Alternatively, if you or your child is scheduled to undergo a surgical procedure in the near future, this may provide an opportunity to donate a muscle specimen. With some procedures, it is possible for the surgeon to remove a small piece of muscle without any additional risk or discomfort to the patient. Cost and time commitment: Participation in this study is free of charge. Travel to Boston is not required and individuals from anywhere in the world may participate. The phone interview, blood draw, and paperwork should take no more than 2 hours to complete.
Reporting of Results:
It is possible that we identify a gene alteration as the cause of the muscle disease in your family.  In this case, and with your permission, we will be happy to make it available to you.  As a research laboratory, we are not authorized to release patient results, but we can refer you to a laboratory that would confirm our findings and report the results to your healthcare provider.

If you would like to know more about this study, please contact:

Children's Hospital Division of Genetics
Enders 5
300 Longwood Avenue
Boston
MA 02115, USA
Phone:  (617) 355-2185
Fax: (617) 355-7588


This page was last updated: February 24, 2008
Copyright: David McDougall. 1999-2008
Contact: davidmcd_@hotmail.com. All emails answered.